San Juan Island Half Day Kayak Tours

Kayak San Juan Island

Small Group Kayak Tours with Awesome Guides

Requiring only 4 hours (Including Transportation and Set-Up), our San Juan Island Half-Day Kayak Tours are the perfect blend of time and adventure. Routes with scenic coastlines and abundant wildlife opportunities. The Half-Day is the best kayak tour option for those looking for a shorter duration of time on the water.

Group Rates: Reserve for 4 or more guests and get 10% off. Text us @ 3603782559 for the promo code.

San Juan Half-Day Kayak Tour Highlights

  • Ideal Group Sizes
  • Wildlife Kayak Route
  • Lime Kiln Lighthouse Views
  • Quality Equipment and Naturalist Guide

*Half-Day Tours will depart from the west side of San Juan Island. We may alter our paddle route and departure location depending on updated weather forecasts or wildlife sighting information.

Daily Departures: 8 AM, 1130 AM and 130 PM

The Discovery Sea Kayak Difference

We set ourselves apart by offering small group tours (larger groups can reserve a private kayak tour), quality kayaking equipment, and professional sea kayak guides. We focus on personalizing your kayak tour experience and reducing our impact as we explore the shoreline. Guides have extensive knowledge of the area and wildlife. We go through substantial training every season to hone our kayaking and leadership skills.

We Provide

  • Kayaking Instruction and Professional Guide
  • Waterproof Pants and Jacket
  • Kayaking Gear
  • Dry Bag
  • Transportation to and from launch location

You Provide

  • Water bottle
  • Sunglasses and Hat
  • Sunscreen
  • Extra Layers
  • Sandals or Water Shoes that can get wet
  • Gratuity for Guides (greatly appreciated)
Style:Advanced Reservations Recommended
Location:West Side San Juan Kayak Tour Route
Duration:4 Hours Door to Door | 2.5 - 3 Hours on the water
Depart:8:00am 11:30am 1:30pm
Our Shop
Activity:Beginner Level
Restriction:12 Years Min / 250 Pounds Max

Tour Dates

Daily April - September
Small Groups
Great Equipment - Fiberglass Kayaks
Highly Trained Sea Kayak Guides

San Juan Island Half Day Kayak Tours Testimonial

Took the west side tour .. it was challenging, fun, and informative .. our guide Talbot was knowledgeable of the history of the area .. and a genuinely nice guy. But the topper of the tour was a bonus. We were passed by like 3 pods of Orcas ... it made an already great experience into magic.

TripAdvisor 2019

Route & Itinerary

The Half Day Kayak Tour routes are set to maximize the opportunity to encounter a diverse range of wildlife and scenery. The West Side Route is our primary kayaking route. The East Side Route is used selectively depending on the weather impacting the West Side Route.

How long will I be on the water? This is a common question and concern. Though the tour requires 4 hours of time this includes transportation to and from the beach and kayak tour set up at the beach. The time of the water will range from 2.5 hours to 3 hours depending on the group. We do our best to provide a comprehensive kayak tutorial before departure and maximize our time on the water.

The West Side Route

The majority of our Half Day Kayak Tours operate on the West Side Paddle Route. We access the water from San Juan County Park provides an easily accessible beach for launching and quick access to the west side route. Though we do not guarantee any specific wildlife encounters this route provides the best opportunity to encounter whales, seals, sea lions, and more. Highlights of the route include views of the Olympic Mountains, Lime Kiln Lighthouse, and diverse kelp forest. 

The East Side Route

The east side of San Juan Island is scattered with offshore rock piles that attract numerous harbor seals. With a large number of seals along the east side, Bigg’s Killer Whale sightings are becoming more common. Along this route, we will explore the shoreline of small islands with curious eagles keeping watch, and near the water’s edge look for bright purple sea stars. In the distance enjoy views of Mount Baker and the Cascade Mountain Range.

The Harbor Route

We have a private dock float in the Port of Friday Harbor that allows us access to parts of the east side of San Juan that other kayak tour companies cannot access easily. The route paddles past forested biological preserves and small offshore islands. Explore the area commonly traveled by Bigg’s Killer Whales, Seals, and treetops with Bald Eagles. The routes offer lots of wildlife viewing and the history of the area.

Please note this itinerary is a rough outline of the day’s travel. We can encounter delays that will affect our departure and arrival time back at the shop.

  • Check-in: 15 minutes prior to your reserved departure time at our office, 260 Spring St.
  • Departure: We will depart on time for your tour.
  • At the Beach: Organize and carry kayaks. Safety Orientation.
  • On the Water: Explore the San Juan’s for 4 – 5 miles.
  • Back at the Beach: Organize and reload kayaks.
  • Head for Town: We will return back to our office as close to on time as possible.

Trips may be delayed due to orca encounters. Because of regulations in place to protect our local orca whales our movements can be restricted when whales are in the area. Please keep in mind this can affect our return time back to town. We will always do our best to get everyone back in a timely manner.

Half Day Kayak Tour Schedule of departure and arrival times

  • 8:00 AM Departure from our Shop | 12:00 PM Arrival back at our shop
  • 11:30 AM Departure from our Shop | 3:30 PM Arrival back at our shop
  • 1:30 PM Departure from our Shop | 5:30 PM Arrival back at our shop


Wildlife & Weather


San Juan Island is home to a wide variety of amazing wildlife:

  • Southern Resident Killer Whales: Salmon eating whales commonly seen June through mid-October.
  • Transient Killer Whales: Marine mammal-eating whales may be seen throughout the year.
  • Baleen Whales: Humpback Whales and Minke Whales.
  • Porpoise: Harbor and Dalls porpoise are encounter year round.
  • Seals and Sea Lions: Harbor Seals, California Sea Lions, and Stellar Sea Lions
  • River Otters: More elusive but seen any time of year. Most sightings are early morning or late afternoon.
  • Bald Eagles: San Juan hosts a healthy population of Bald Eagles with many nesting sites.

Every day is different and we can encounter other species of whales, seals, porpoise, and birds not listed above.


Early Season: Spring weather on San Juan is typically cool with daytime temperatures ranging from the low 50’s F to the mid 60’s F. Expect partly cloudy skies with light breezes to windy conditions.

Summer Season: San Juan Island can have some of the most pleasant summer weather. With half the annual rainfall of the Seattle area, San Juan is typically dry all summer. Temperatures range from upper 60’s F to the mid 80’s F. Skies are usually blue and clear, great for evening star gazing.

Late Season: Fall can be one of the best times to visit San Juan Island. The days become cooler, ranging from the low 50’s F to the mid 60’s F. Winds can be light to moderate depending on the current weather systems.

More Tour Related Info

Tour Preparation
San Juan Island
Whale Guidelines

Sea Kayaking Tours of the San Juan Islands

The San Juan Islands are a small chain of islands in the Salish Sea. The area is a world renowned kayak tour destination in Washington State.